Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Method _exptl.method | NEUTRON DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | LAUE SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SPALLATION SOURCE The general class of the radiation source. |
Source details _diffrn_source.type | J-PARC MLF BEAMLINE BL-03 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | JPARC MLF Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL-03 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 288 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | DIFFRACTOMETER The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2019-02-01 The date of data collection. |
Detector _diffrn_detector.type | iBIX The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 2.9-5.6 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | STARGazer The classification of the program according to its |
Phasing _software.classification | PHENIX (1.19.2_4158) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.19.2_4158) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 54.81 Unit-cell length a corresponding to the structure reported in 68.29 Unit-cell length b corresponding to the structure reported in 89.73 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.00000 The radiation wavelength in angstroms. 2.90000 The radiation wavelength in angstroms. 5.60000 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 50.000 The largest value in angstroms for the interplanar spacings | 2.690 The highest value in angstroms for the interplanar spacings | 1.830 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.800 The smallest value in angstroms for the interplanar spacings | 2.590 The smallest value in angstroms for the interplanar spacings | 1.800 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.087 The R value for merging intensities satisfying the observed | 0.623 The value of Rmerge(I) for reflections classified as 'observed' | 0.254 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - | - |
Rpim | - | - | - |
Total number of observations | - | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 31948 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 1149 The total number of measured reflections classified as 'observed' | 1574 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI | 19.30 The mean of the ratio of the intensities to their | - | - |
Completeness [%] _reflns.percent_possible_obs | 100.0 The percentage of geometrically possible reflections represented | - | - |
Multiplicity _reflns.pdbx_redundancy | 6.5 Overall redundancy for this data set. | - | - |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 8W4Z |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2023-08-25 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 20.3 - 2.590 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2224 / 0.2419 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | WARNING: no starting model (for MR) given |