Data quality metrics extracted from 5w3k.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5W3K at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2017-02-28
Detector
_diffrn_detector.type
ADSC QUANTUM 210r
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.11.1_2575)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
63.941 80.773 66.748 90.00 92.49 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00640 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
34.545 1.620
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.589 1.590
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.065 0.659
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.025 0.285
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
90047 4239
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.20 2.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.8 94.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.6 6.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5W3K
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-06-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
34.5 - 1.589 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1600 / 0.1866
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4XDZ