Data quality metrics extracted from 3vzu.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3VZU at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL11-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL11-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-03-31
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data collection
_software.classification
HKL-2000
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
SHARP
Refinement
_software.classification
REFMAC (5.6.0117)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 63
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
84.482 84.482 106.302 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
42.260 2.970
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.900 2.900
Rmerge
_reflns_shell.pdbx_Rsym_value
- 0.338
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
8668 -
<I/σ(I)>
_reflns_shell.meanI_over_sigI_obs
- 3.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
91.7 47.0
Multiplicity
_reflns_shell.pdbx_redundancy
- 6.0
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3VZU
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-10-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
39.3 - 2.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2374 / 0.2733
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3A2R