Data quality metrics extracted from 5vxn.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5VXN at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-G
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-G
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-06-16
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97857
Software
Data collection
_software.classification
BLU-MAX
Data processing
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (1.10_2155: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
74.116 113.231 76.868 90.00 115.37 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97857 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
113.230
High resolution limit [Å]
_reflns.d_resolution_high
3.370
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.100
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
15089
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.80
Completeness [%]
_reflns.percent_possible_obs
93.0
Multiplicity
_reflns.pdbx_redundancy
4.3
CC(1/2)
_reflns.pdbx_CC_half
0.990

Refinement
PDB entry ID
_entry.id
5VXN
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-05-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
56.6 - 3.375 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1985 / 0.2683