Data quality metrics extracted from 5vty.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5VTY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 23-ID-D
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
23-ID-D
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-10-15
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0331
Software
Data reduction
_software.classification
HKL-2000 (712)
Data scaling
_software.classification
HKL-2000 (712)
Phasing
_software.classification
PHASER (2.5.6)
Refinement
_software.classification
REFMAC (5.8.0135)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
210.078 130.830 72.368 90.00 98.95 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.03310 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
110.670
High resolution limit [Å]
_reflns.d_resolution_high
2.350
Rmerge
_reflns.pdbx_Rsym_value
0.100
  Rmeas -
Rpim
_reflns.pdbx_Rpim_I_all
0.040
  Total number of observations -
Total number unique
_reflns.number_obs
78249
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.40
Completeness [%]
_reflns.percent_possible_obs
98.4
Multiplicity
_reflns.pdbx_redundancy
6.1
CC(1/2)
_reflns.pdbx_CC_half
1.000

Refinement
PDB entry ID
_entry.id
5VTY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-05-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
110.7 - 2.360 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1796 / 0.2096
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4FNK