Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | ALS BEAMLINE 8.2.1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | ALS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 8.2.1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2005-01-21 The date of data collection. |
Detector _diffrn_detector.type | ADSC The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.97963, 0.99187, 0.97941 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | MOSFLM The classification of the program according to its |
Data scaling #1 _software.classification | SCALA (5.0)) The classification of the program according to its |
Data scaling #2 _software.classification | CCP4 (SCALA) The classification of the program according to its |
Phasing _software.classification | SOLVE The classification of the program according to its |
Refinement #1 _software.classification | REFMAC (5.2.0005) The classification of the program according to its |
Refinement #2 _software.classification | Xpleo The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 41 21 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 70.658 Unit-cell length a corresponding to the structure reported in 70.658 Unit-cell length b corresponding to the structure reported in 222.292 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.99187 The radiation wavelength in angstroms. 0.97963 The radiation wavelength in angstroms. 0.97941 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 29.810 The largest value in angstroms for the interplanar spacings | 2.050 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.000 The smallest value in angstroms for the interplanar spacings | 2.000 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.065 The R value for merging intensities satisfying the observed | 0.109 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - |
Rpim | - | - |
Total number of observations | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 38627 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2387 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 21.00 The mean of the ratio of the intensities to their | 10.20 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 98.8 The percentage of geometrically possible reflections represented | 90.7 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 5.3 Overall redundancy for this data set. | 3.0 Redundancy for the current shell. |
CC(1/2) | - | - |
Refinement | |
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PDB entry ID _entry.id | 1VRA |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2005-02-17 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 29.8 - 2.000 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1397 / 0.1578 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |