Data quality metrics extracted from 3vqu.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3VQU at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2007-12-13
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54178
Software
Data collection
_software.classification
CrystalClear
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.15; 2009/03/31; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
MOLREP (Alexei Vaguine; alexei@ysbl.york.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 2 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
71.47 106.07 112.08 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54178 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
77.040 39.812 2.530
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.400 7.590 2.400
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.073 0.040 0.574
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.065 0.692
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.029 0.283
Total number of observations
_reflns_shell.number_measured_all
- 2852 13908
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
17032 600 2441
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.80 12.90 1.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.2 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.6 4.8 5.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3VQU
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-03-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2468 / 0.2844
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given