Data quality metrics extracted from 3vp6.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3VP6 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2008-04-17
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.953638
Software
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.2.25; 21/9/2006; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Refinement #1
_software.classification
BUSTER-TNT ('BUSTER 2.10.0; Gerard Bricogne; buster-develop@GlobalPhasing.com)
Refinement #2
_software.classification
BUSTER (2.10.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
86.006 64.084 102.646 90.00 108.14 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95364 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
97.590 54.800 2.210
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 6.640 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.079 0.027 0.443
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.033 0.519
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.017 0.269
Total number of observations
_reflns_shell.number_measured_all
- 6892 33248
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
62211 2031 9046
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.40 18.20 1.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 98.4 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.4 3.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3VP6
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-02-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
24.2 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1971 / 0.2343
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given