Data quality metrics extracted from 2vpt.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2VPT at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SRS BEAMLINE PX10.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SRS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PX10.1
Temperature [K]
_diffrn.ambient_temp
293
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2005-11-16
Detector
_diffrn_detector.type
ADSC CCD
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA
Phasing
_software.classification
SHELXD
Refinement
_software.classification
REFMAC (5.2.0019)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 31 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
77.977 77.977 66.800 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.93300 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.500 1.440
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.400 1.400
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.090 0.420
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
46638 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
18.40 4.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 99.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
10.9 10.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2VPT
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-03-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.1 - 1.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1535 / 0.1758
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD
Starting model
_refine.pdbx_starting_model
NONE