Data quality metrics extracted from 2vpn.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2VPN at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X10SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X10SA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-11-06
Detector
_diffrn_detector.type
MARRESEARCH
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
autoSHARP
Refinement
_software.classification
REFMAC (5.4.0069)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
48.3 52.2 63.5 80.8 85.8 77.9
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97810 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 1.650
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.550 1.550
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.010 0.060
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
81024 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
9.20 2.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
93.3 92.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.0 1.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2VPN
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-03-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 1.550 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1580 / 0.2040
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD
Starting model
_refine.pdbx_starting_model
NONE