Data quality metrics extracted from 1vk1.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1VK1 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2003-12-19
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Software
Data reduction
_software.classification
DENZO (Zbyszek Otwinowski; zbyszek@mix.swmed.edu)
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; zbyszek@mix.swmed.edu)
Phasing #1
_software.classification
SOLVE (2.03; 20-Sept-2002; Tom Terwilliger; terwilliger@LANL.gov)
Phasing #2
_software.classification
RESOLVE (2.03; 10-Aug-2002; Terwilliger, T. C; terwilliger@LANL.gov)
Phasing #3
_software.classification
SCA2STRUCTURE (PIPELINE)
Model building #1
_software.classification
ARP/wARP (refmac_5.2.0001; 24/04/2001; Murshudov, G.N.; ccp4@dl.ac.uk)
Model building #2
_software.classification
MolProbity (2003)
Refinement
_software.classification
REFMAC (refmac_5.2.0001; 24/04/2001; Murshudov, G.N.; ccp4@dl.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
115.148 40.099 65.671 90.00 122.29 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.07000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 1.240
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.200 1.200
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.040 0.140
  Rmeas - -
  Rpim - -
  Total number of observations - -
  Total number unique - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
34.30 4.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
80.5 21.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.4 1.1
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1VK1
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2004-04-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
55.9 - 1.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1650 / 0.1750
Structure solution method
_refine.pdbx_method_to_determine_struct
SINGLE WAVELENGTH ANOMALOUS SCATTERING