Data quality metrics extracted from 3vha.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3VHA at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE AR-NW12A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
AR-NW12A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2005-12-13
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.000
Software
Data reduction
_software.classification
MOSFLM (7.0.7; Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
MOLREP (8.2.01; Alexei Vaguine; alexei@ysbl.york.ac.uk)
Refinement #1
_software.classification
BUSTER-TNT (2.11.2; Dale E. Tronrud)
Refinement #2
_software.classification
BUSTER (2.11.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
52.91 44.14 53.99 90.00 115.19 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
32.452 32.750 1.420
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.388 6.210 1.390
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.053 0.040 0.540
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 1699 9986
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
45378 504 3193
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
13.30 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 92.3 95.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.4 3.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3VHA
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-08-24
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
27.8 - 1.390 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1872 / 0.2157
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given