Data quality metrics extracted from 3vgc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3VGC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RUH2R
Temperature [K]
_diffrn.ambient_temp
287
Detector technology
_diffrn_detector.detector
AREA DETECTOR
Collection date
_diffrn_detector.pdbx_collection_date
1995-04
Detector
_diffrn_detector.type
SIEMENS
Software
Data reduction
_software.classification
XDS
Data scaling #1
_software.classification
XDS
Data scaling #2
_software.classification
XSCALE
Phasing
_software.classification
X-PLOR (3.1)
Model building
_software.classification
X-PLOR (3.1)
Refinement
_software.classification
X-PLOR (3.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 42 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
69.895 69.895 97.142 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
10.000 1.750
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.670 1.670
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.066 0.273
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
25288 -
  <I/σ(I)> - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
84.7 36.6
Multiplicity
_reflns.pdbx_redundancy
5.2 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3VGC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1997-05-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
10.0 - 1.670 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2011 / 0.2420
Structure solution method
_refine.pdbx_method_to_determine_struct
DIRECT SOLUTION WITH KNOWN STRUCTURE
Starting model
_refine.pdbx_starting_model
PDB ENTRY 3GCH