Data quality metrics extracted from 5vef.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5VEF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-E
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-E
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-11-04
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97919
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
61.940 61.940 182.741 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97919 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 1.810
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.750 1.750
  Rmerge - -
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.031 0.709
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
35807 3297
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
20.40 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.0 91.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
12.2 10.4
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5VEF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-04-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
43.8 - 1.752 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2002 / 0.2390
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4FIJ