Data quality metrics extracted from 5ve8.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5VE8 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-G
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-G
Temperature [K]
_diffrn.ambient_temp
105
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-11-04
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9786
Software
Data processing
_software.classification
HKL-2000 (HKL2000_v714-Linux)
Data scaling
_software.classification
HKL-2000 (HKL2000_v714-Linux)
Model building
_software.classification
Coot (0.8.7)
Refinement
_software.classification
PHENIX (1.11.1_2575: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
79.098 88.114 102.276 79.59 80.77 70.74
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97860 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.750
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.700 2.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.043 0.587
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.042 0.425
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
69157 3411
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
18.80 1.56
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.0 98.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.0 3.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5VE8
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-04-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
44.6 - 2.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1850 / 0.2297
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5VCH