Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | ROTATING ANODE The general class of the radiation source. |
Source details _diffrn_source.type | RIGAKU MICROMAX-007 HF The make, model or name of the source of radiation. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2016-10-20 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS 200K The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.54056 Comma separated list of wavelengths or wavelength range. |
Software | |
Data collection _software.classification | CrysalisPro The classification of the program according to its |
Data reduction _software.classification | CrysalisPro The classification of the program according to its |
Data scaling _software.classification | CrysalisPro The classification of the program according to its |
Phasing _software.classification | MOLREP The classification of the program according to its |
Model building _software.classification | Coot (v0.9.5) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.19.2_4158) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 34.403 Unit-cell length a corresponding to the structure reported in 30.702 Unit-cell length b corresponding to the structure reported in 63.804 Unit-cell length c corresponding to the structure reported in 90.000 Unit-cell angle alpha of the reported structure in degrees. 105.565 Unit-cell angle beta of the reported structure in degrees. 90.000 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.54056 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 20.020 The largest value in angstroms for the interplanar spacings | 0.950 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 0.930 The smallest value in angstroms for the interplanar spacings | 0.930 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.114 The R value for merging intensities satisfying the observed | 0.914 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all | 0.124 The redundancy-independent merging R factor value Rrim, | - |
Rpim _reflns.pdbx_Rpim_I_all | 0.047 The precision-indicating merging R factor value Rpim, | - |
Total number of observations | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 86393 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 4341 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 9.70 The mean of the ratio of the intensities to their | 0.50 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 100.0 The percentage of geometrically possible reflections represented | 99.7 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 11.9 Overall redundancy for this data set. | 5.0 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.998 The Pearson's correlation coefficient expressed as a decimal value | 0.069 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 7VDN |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2021-09-07 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 20.0 - 0.930 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1870 / 0.2105 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 1VXC |