Data quality metrics extracted from 3vcd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3VCD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-10-16
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9794
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing
_software.classification
PHASER (2.1.4; Wed Jun 24 14:00:05 2009; Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement #1
_software.classification
BUSTER-TNT (Gerard Bricogne; buster-develop@GlobalPhasing.com)
Refinement #2
_software.classification
BUSTER (2.10.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
137.92 137.92 560.57 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97940 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
100.000 100.000 2.430
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.350 5.060 2.350
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.066 0.040 0.509
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
81734 8904 7516
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.0 99.2 88.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.9 8.2 3.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3VCD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-01-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
81.7 - 2.350 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1805 / 0.2129
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given