Data quality metrics extracted from 6vbp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6VBP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2017-08-02
Detector
_diffrn_detector.type
RAYONIX MX300-HS
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHENIX (1.14_3228)
Refinement
_software.classification
PHENIX (1.14_3228)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
69.903 158.531 92.646 90.00 110.27 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.350
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.298 2.298
  Rmerge - -
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.075 0.483
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
80681 6592
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.31 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.9 77.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.0 2.8
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
6VBP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-12-19
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
45.2 - 2.298 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1803 / 0.2287
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4KMT