Data quality metrics extracted from 5vbx.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5VBX at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 23-ID-B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
23-ID-B
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-02-21
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.003
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
100.376 69.522 59.894 90.00 109.55 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00300 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
29.598
High resolution limit [Å]
_reflns.d_resolution_high
2.050
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.146
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
24465
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.24
Completeness [%]
_reflns.percent_possible_obs
100.0
Multiplicity
_reflns.pdbx_redundancy
4.2
CC(1/2)
_reflns.pdbx_CC_half
0.996

Refinement
PDB entry ID
_entry.id
5VBX
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-03-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.6 - 2.050 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1916 / 0.2424
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1F7T