Experiment | |
---|---|
Method _exptl.method | ELECTRON CRYSTALLOGRAPHY The method used in the experiment. |
Source type _diffrn_source.source | ELECTRON MICROSCOPE The general class of the radiation source. |
Source details _diffrn_source.type | TECNAI F20 TEM The make, model or name of the source of radiation. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CMOS The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2016-08-25 The date of data collection. |
Detector _diffrn_detector.type | TVIPS TEMCAM-F416 The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.0251 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | XSCALE (Wolfgang Kabsch) The classification of the program according to its |
Phasing _software.classification | PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk) The classification of the program according to its |
Refinement _software.classification | BUSTER (Gerard Bricogne; buster-develop@GlobalPhasing.com) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 20.36 Unit-cell length a corresponding to the structure reported in 43.22 Unit-cell length b corresponding to the structure reported in 4.82 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.02510 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 10.180 The largest value in angstroms for the interplanar spacings | 10.180 The highest value in angstroms for the interplanar spacings | 1.310 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.250 The smallest value in angstroms for the interplanar spacings | 4.330 The smallest value in angstroms for the interplanar spacings | 1.250 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.239 The R value for merging intensities satisfying the observed | 0.132 The value of Rmerge(I) for reflections classified as 'observed' | 0.475 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.265 The redundancy-independent merging R factor value Rrim, | 0.142 The redundancy-independent merging R factor value Rrim, | 0.599 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs | 5454 Total number of measured reflections. | 183 The number of reflections classified as 'observed' | 267 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 1226 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 36 The total number of measured reflections classified as 'observed' | 106 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 3.58 The mean of the ratio of the intensities to their | 8.76 The ratio of the mean of the intensities of the reflections | 1.59 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 86.8 The percentage of geometrically possible reflections represented | 76.6 The percentage of geometrically possible reflections represented | 71.6 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.4 Overall redundancy for this data set. | 5.1 Redundancy for the current shell. | 2.5 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.986 The Pearson's correlation coefficient expressed as a decimal value | - | 0.554 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
---|---|
PDB entry ID _entry.id | 5V5C |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2017-03-14 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 10.2 - 1.250 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2194 / 0.2664 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | WARNING: no starting model (for MR) given |