Data quality metrics extracted from 5v3v.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5V3V at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RUH3R
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2011-12-03
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
d*TREK (9.9.8.9 W9RSSI)
Data scaling
_software.classification
d*TREK
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.11.1_2575)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
49.449 122.303 111.494 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
45.844 45.810 2.230
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.140 4.630 2.150
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.072 0.058 0.310
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
17139 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.90 25.00 2.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
90.3 83.4 92.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.1 2.2 2.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5V3V
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-03-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
45.8 - 2.140 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2114 / 0.2322
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS