Data quality metrics extracted from 5v3s.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5V3S at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X4C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X4C
Temperature [K]
_diffrn.ambient_temp
80
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-01-19
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97869
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
CRANK
Refinement
_software.classification
REFMAC (5.7.0032)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
59.288 34.419 71.436 90.00 96.54 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97869 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
40.000
High resolution limit [Å]
_reflns.d_resolution_high
1.800
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.096
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
26255
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.81
Completeness [%]
_reflns.percent_possible_obs
97.4
Multiplicity
_reflns.pdbx_redundancy
3.8
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5V3S
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-03-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
28.0 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2159 / 0.2699
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD