Data quality metrics extracted from 3upc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3UPC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-09-11
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.95369
Software
Data collection
_software.classification
Blu-Ice (ice)
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.16; 2010/01/06; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (2.3.0; Thu Mar 10 12:41:09 2011 (svn ); Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
82.61 143.12 145.61 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95369 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
145.610 43.418 2.950
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.800 8.850 2.800
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.151 0.034 0.777
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.037 0.836
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.014 0.306
Total number of observations
_reflns_shell.number_measured_all
- 10147 46056
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
43312 1516 6259
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.50 15.90 1.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.2 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.2 6.7 7.4
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3UPC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-11-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
145.6 - 2.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2093 / 0.2470
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 3QOS