Data quality metrics extracted from 5uod.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5UOD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL14-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL14-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-12-16
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.18
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
Aimless
Phasing
_software.classification
REFMAC
Refinement
_software.classification
PHENIX (1.8.2_1309)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
57.54 106.06 156.65 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.18000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
80.000 2.090
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.010 2.010
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.082 0.863
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.074 0.767
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
62276 4031
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
6.60 0.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.5 89.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.9 3.9
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.996 0.530

Refinement
PDB entry ID
_entry.id
5UOD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-01-31
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
78.3 - 2.010 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1682 / 0.2109
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS