Data quality metrics extracted from 5um2.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5UM2 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I02
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I02
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-04-30
Detector
_diffrn_detector.type
DECTRIS PILATUS3 S 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9794
Software
Data reduction
_software.classification
XDS (3.3)
Data scaling
_software.classification
SCALA
Phasing
_software.classification
PHASER
Model building
_software.classification
PHENIX (1.11.1_2575: ???)
Refinement
_software.classification
PHENIX (1.11.1_2575: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
183.06 54.54 34.20 90.0 98.9 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97940 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
30.160
High resolution limit [Å]
_reflns.d_resolution_high
1.140
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.039
  Rmeas -
Rpim
_reflns.pdbx_Rpim_I_all
0.025
  Total number of observations -
Total number unique
_reflns.number_obs
207316
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.20
Completeness [%]
_reflns.percent_possible_obs
93.0
Multiplicity
_reflns.pdbx_redundancy
1.9
CC(1/2)
_reflns.pdbx_CC_half
0.998

Refinement
PDB entry ID
_entry.id
5UM2
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-01-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.2 - 1.140 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1207 / 0.1389
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1SBP