Data quality metrics extracted from 6ugb.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6UGB at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2018-08-17
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.77490
Software
Data reduction
_software.classification
XDS (20180126)
Data scaling
_software.classification
XSCALE (20180126)
Phasing
_software.classification
SHELXD (SHELXT actually)
Refinement
_software.classification
REFMAC (5.8.0266)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P -3
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
24.72 24.72 19.59 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.77490 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
21.410 21.410 0.970
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
0.950 4.250 0.950
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.063 0.049 1.122
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.075 0.057 1.398
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
7972 78 591
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.44 23.32 1.16
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.1 82.1 95.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.9 3.7 2.5
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.997 0.996 0.393

Refinement
PDB entry ID
_entry.id
6UGB
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-09-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
21.4 - 0.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1593 / 0.1618
Structure solution method
_refine.pdbx_method_to_determine_struct
AB INITIO PHASING