Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | ROTATING ANODE The general class of the radiation source. |
Source details _diffrn_source.type | RIGAKU MICROMAX-007 HF The make, model or name of the source of radiation. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2021-08-18 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER R 4M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.5406 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | CrysalisPro (41.64.69a) The classification of the program according to its |
Data scaling _software.classification | Aimless (0.5.32) The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Refinement _software.classification | PHENIX (1.13_2998) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 42 21 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 128.363 Unit-cell length a corresponding to the structure reported in 128.363 Unit-cell length b corresponding to the structure reported in 42.446 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.54060 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 28.703 The largest value in angstroms for the interplanar spacings | 28.700 The highest value in angstroms for the interplanar spacings | 2.720 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.600 The smallest value in angstroms for the interplanar spacings | 9.010 The smallest value in angstroms for the interplanar spacings | 2.600 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.140 The R value for merging intensities satisfying the observed | 0.029 The value of Rmerge(I) for reflections classified as 'observed' | 0.590 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.159 The redundancy-independent merging R factor value Rrim, | 0.033 The redundancy-independent merging R factor value Rrim, | 0.669 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.074 The precision-indicating merging R factor value Rpim, | 0.016 The precision-indicating merging R factor value Rpim, | 0.310 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns_shell.number_measured_all | - | 1214 The total number of reflections measured for this | 5918 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 11385 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 308 The total number of measured reflections classified as 'observed' | 1354 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs | 10.70 The mean of the ratio of the intensities to their | 30.20 The mean of the ratio of the intensities to their | 2.90 The mean of the ratio of the intensities to their |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.6 The percentage of geometrically possible reflections represented | 94.8 The percentage of geometrically possible reflections represented | 100.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.3 Overall redundancy for this data set. | 3.9 Redundancy for the current shell. | 4.4 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.991 The Pearson's correlation coefficient expressed as a decimal value | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.817 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 7UBQ |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2022-03-15 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 28.7 - 2.600 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1766 / 0.2519 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 1w8g |