Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | PHOTON FACTORY BEAMLINE BL-5A The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | Photon Factory Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL-5A Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2013-10-27 The date of data collection. |
Detector _diffrn_detector.type | ADSC QUANTUM 315r The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.60366, 1.60546, 1.0 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | CrystalClear The classification of the program according to its |
Data scaling _software.classification | d*TREK The classification of the program according to its |
Phasing #1 _software.classification | PHENIX The classification of the program according to its |
Phasing #2 _software.classification | SOLVE The classification of the program according to its |
Model building _software.classification | SOLVE The classification of the program according to its |
Refinement _software.classification | CNS The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 61 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 48.52 Unit-cell length a corresponding to the structure reported in 48.52 Unit-cell length b corresponding to the structure reported in 46.52 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 120.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.60366 The radiation wavelength in angstroms. 1.60546 The radiation wavelength in angstroms. 1.00000 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 42.020 The largest value in angstroms for the interplanar spacings | 42.020 The highest value in angstroms for the interplanar spacings | 1.970 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.900 The smallest value in angstroms for the interplanar spacings | 4.090 The smallest value in angstroms for the interplanar spacings | 1.900 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.030 The R value for merging intensities satisfying the observed | 0.015 The value of Rmerge(I) for reflections classified as 'observed' | 0.316 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - | - |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 53970 Total number of measured reflections. | 5548 The total number of reflections measured for this | 5493 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 4976 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 507 The total number of measured reflections which are symmetry- | 503 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 32.60 The mean of the ratio of the intensities to their | 118.10 The ratio of the mean of the intensities of the reflections | 6.40 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.8 The percentage of geometrically possible reflections represented | 98.1 The percentage of geometrically possible reflections represented | 100.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 10.8 Overall redundancy for this data set. | 10.9 Redundancy for the current shell. | 10.8 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 4U6L |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2014-07-29 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 42.0 - 1.900 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2505 / 0.2752 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |