Experiment | |
---|---|
Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | ESRF BEAMLINE ID29 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | ESRF Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | ID29 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2013-12-16 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS 6M-F The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.97939 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction #1 _software.classification | XDS The classification of the program according to its |
Data reduction #2 _software.classification | XSCALE The classification of the program according to its |
Data scaling _software.classification | XSCALE The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Refinement _software.classification | PHENIX (phenix.refine: 1.8.4_1496) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 254.24 Unit-cell length a corresponding to the structure reported in 82.16 Unit-cell length b corresponding to the structure reported in 98.90 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.97939 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 58.989 The largest value in angstroms for the interplanar spacings | 58.989 The highest value in angstroms for the interplanar spacings | 2.980 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.900 The smallest value in angstroms for the interplanar spacings | 12.970 The smallest value in angstroms for the interplanar spacings | 2.900 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.082 The R value for merging intensities satisfying the observed | 0.035 The value of Rmerge(I) for reflections classified as 'observed' | 0.963 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.089 The redundancy-independent merging R factor value Rrim, | 0.039 The redundancy-independent merging R factor value Rrim, | 1.045 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs | 307501 Total number of measured reflections. | 3229 The number of reflections classified as 'observed' | 22535 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 46790 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 606 The total number of measured reflections classified as 'observed' | 3358 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 13.97 The mean of the ratio of the intensities to their | 31.41 The ratio of the mean of the intensities of the reflections | 1.93 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.8 The percentage of geometrically possible reflections represented | 97.9 The percentage of geometrically possible reflections represented | 98.7 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy | 6.6 Overall redundancy for this data set. | - | - |
CC(1/2) | - | - | - |
Refinement | |
---|---|
PDB entry ID _entry.id | 4U4J |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2014-07-23 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 59.0 - 2.900 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2436 / 0.2841 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 4U48 |