Data quality metrics extracted from 3u2d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3U2D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU FR-E+ SUPERBRIGHT
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2008-09-04
Detector
_diffrn_detector.type
RIGAKU SATURN 944
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data collection
_software.classification
JDirector
Data reduction
_software.classification
d*TREK (9.8L; Dec 28 2007; Jim W. Pflugrath; Jim.Pflugrath@Rigaku.com)
Data scaling
_software.classification
d*TREK (Jim W. Pflugrath; Jim.Pflugrath@Rigaku.com)
Phasing
_software.classification
AMoRE (Jorge Navaza; ccp4@ccp4.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
143.487 55.646 51.103 90.00 100.38 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
51.770 51.770 1.920
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.850 3.990 1.850
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.095 0.051 0.335
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 10718 8073
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
33210 3416 3120
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
6.60 16.20 2.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.6 97.8 92.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.0 3.1 2.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3U2D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-10-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
51.8 - 1.850 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2007 / 0.2322
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given