Data quality metrics extracted from 5tr4.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5TR4 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 31-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
31-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-08-17
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97929
Software
Data reduction
_software.classification
HKL-2000
Data scaling #1
_software.classification
HKL-2000
Data scaling #2
_software.classification
HKL
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.8.0155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
212.485 172.148 79.424 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97929 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 2.280
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.200 4.740 2.200
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.140 0.064 1.164
Rmeas
_reflns.pdbx_Rrim_I_all
0.151 - -
Rpim
_reflns.pdbx_Rpim_I_all
0.056 - -
Total number of observations
_reflns.pdbx_number_measured_all
1011343 - -
Total number unique
_reflns.number_obs
146857 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
6.00 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.8 99.5 97.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.9 7.1 6.7
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.995 0.616

Refinement
PDB entry ID
_entry.id
5TR4
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-10-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 2.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2163 / 0.2559
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3CMM