Data quality metrics extracted from 6top.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6TOP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SOLEIL BEAMLINE PROXIMA 1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SOLEIL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PROXIMA 1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2018-07-18
Detector
_diffrn_detector.type
DECTRIS PILATUS3 S 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97911
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
PHASER
Refinement
_software.classification
BUSTER (2.10.3 (3-OCT-2019))
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
208.03 52.22 66.56 90.00 108.38 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97911 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
49.350 1.590
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.550 1.550
  Rmerge - -
Rmeas
_reflns.pdbx_Rrim_I_all
0.090 -
Rpim
_reflns.pdbx_Rpim_I_all
0.019 -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
96340 5637
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
19.70 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.6 77.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
22.0 14.0
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.850

Refinement
PDB entry ID
_entry.id
6TOP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-12-11
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.0 - 1.550 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1899 / 0.2152
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD