Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | ROTATING ANODE The general class of the radiation source. |
Source details _diffrn_source.type | RIGAKU FR-E+ SUPERBRIGHT The make, model or name of the source of radiation. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2014-05-16 The date of data collection. |
Detector _diffrn_detector.type | RIGAKU SATURN 92 The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.54 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS The classification of the program according to its |
Phasing #1 _software.classification | SHELX The classification of the program according to its |
Phasing #2 _software.classification | SHELXD The classification of the program according to its |
Model building _software.classification | Coot The classification of the program according to its |
Refinement _software.classification | PHENIX (phenix.refine: 1.9_1692) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 2 2 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 32.98 Unit-cell length a corresponding to the structure reported in 37.83 Unit-cell length b corresponding to the structure reported in 151.63 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.54000 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 37.910 The largest value in angstroms for the interplanar spacings | 8.940 The highest value in angstroms for the interplanar spacings | 2.050 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.000 The smallest value in angstroms for the interplanar spacings | 6.320 The smallest value in angstroms for the interplanar spacings | 2.000 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.053 The R value for merging intensities satisfying the observed | 0.025 The value of Rmerge(I) for reflections classified as 'observed' | 0.296 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.054 The redundancy-independent merging R factor value Rrim, | 0.025 The redundancy-independent merging R factor value Rrim, | 0.306 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs | 695979 Total number of measured reflections. | 14419 The number of reflections classified as 'observed' | 27487 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 24800 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 497 The total number of measured reflections classified as 'observed' | 1815 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 56.03 The mean of the ratio of the intensities to their | 140.09 The ratio of the mean of the intensities of the reflections | 10.52 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 100.0 The percentage of geometrically possible reflections represented | 99.8 The percentage of geometrically possible reflections represented | 99.9 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy | 28.1 Overall redundancy for this data set. | - | - |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 4TMD |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2014-06-01 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 37.9 - 2.000 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1880 / 0.2159 |
Structure solution method _refine.pdbx_method_to_determine_struct | SAD |