Data quality metrics extracted from 5sy5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5SY5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-10-24
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data collection
_software.classification
HKL-3000
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
69.948 81.187 138.062 90.38 95.08 107.39
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 3.260
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.200 8.670 3.200
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.055 0.026 0.764
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
46508 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.50 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.6 94.6 98.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.1 2.1 2.2
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.993 0.459

Refinement
PDB entry ID
_entry.id
5SY5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-08-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.9 - 3.201 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1764 / 0.2467
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4ZP4