Data quality metrics extracted from 3syk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3SYK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID23-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID23-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-12-16
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97915
Software
Data reduction
_software.classification
XDS
Data scaling #1
_software.classification
SCALA (3.3.9; 2008/10/21; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Data scaling #2
_software.classification
XDS
Phasing #1
_software.classification
SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de)
Phasing #2
_software.classification
RESOLVE (2.13; 6-Mar-2008; Thomas C. Terwilliger; terwilliger@lanl.gov)
Phasing #3
_software.classification
SHELXD
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
76.770 93.993 106.964 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97915 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
43.883 43.883 3.250
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.081 9.740 3.080
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.064 0.022 0.322
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 1701 7304
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
14768 532 2023
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.10 28.20 2.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 98.5 95.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.6 3.2 3.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3SYK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-07-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 3.080 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2197 / 0.2832
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD