Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | MAX IV BEAMLINE BioMAX The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | MAX IV Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BioMAX Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2020-06-12 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.999900 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing _software.classification | xdsapp (3.1.5d; 5. March 2022) The classification of the program according to its |
Data reduction _software.classification | XDS (Jan 10, 2022; 11-May-2022) The classification of the program according to its |
Data scaling _software.classification | Aimless () The classification of the program according to its |
Phasing _software.classification | PHENIX (1.17.1_3660) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.17.1_3660) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | C 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 88.696 Unit-cell length a corresponding to the structure reported in 82.109 Unit-cell length b corresponding to the structure reported in 93.743 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 108.49 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.99990 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 44.450 The largest value in angstroms for the interplanar spacings | 44.450 The highest value in angstroms for the interplanar spacings | 44.450 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.550 The smallest value in angstroms for the interplanar spacings | 4.620 The smallest value in angstroms for the interplanar spacings | 1.550 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns_shell.Rmerge_I_obs | - | 0.048 The value of Rmerge(I) for reflections classified as 'observed' | 2.172 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.066 The redundancy-independent merging R factor value Rrim, | 0.053 The redundancy-independent merging R factor value Rrim, | 2.354 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 641507 Total number of measured reflections. | 24575 The total number of reflections measured for this | 99689 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 92385 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 3565 The total number of measured reflections which are symmetry- | 14602 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 11.77 The mean of the ratio of the intensities to their | 39.85 The ratio of the mean of the intensities of the reflections | 0.51 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.5 The percentage of geometrically possible reflections represented | 99.3 The percentage of geometrically possible reflections represented | 97.5 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 6.9 Overall redundancy for this data set. | 6.9 Redundancy for the current shell. | 6.8 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.998 The Pearson's correlation coefficient expressed as a decimal value | 0.996 The Pearson's correlation coefficient expressed as a decimal value | 0.437 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 5STU |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2022-08-26 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 44.5 - 1.550 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2110 / 0.2420 |
Structure solution method _refine.pdbx_method_to_determine_struct | FOURIER SYNTHESIS |