Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | APS BEAMLINE 24-ID-C The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | APS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 24-ID-C Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2020-12-11 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER2 X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.97911 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing _software.classification | autoPROC The classification of the program according to its |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling #1 _software.classification | pointless The classification of the program according to its |
Data scaling #2 _software.classification | Aimless The classification of the program according to its |
Data scaling #3 _software.classification | STARANISO The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Refinement _software.classification | BUSTER (2.10.4) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 63.826 Unit-cell length a corresponding to the structure reported in 272.783 Unit-cell length b corresponding to the structure reported in 73.518 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 114.22 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.97911 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 49.025 The largest value in angstroms for the interplanar spacings | 49.025 The highest value in angstroms for the interplanar spacings | 2.648 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.353 The smallest value in angstroms for the interplanar spacings | 7.557 The smallest value in angstroms for the interplanar spacings | 2.353 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.104 The R value for merging intensities satisfying the observed | 0.053 The value of Rmerge(I) for reflections classified as 'observed' | 0.616 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.123 The redundancy-independent merging R factor value Rrim, | 0.064 The redundancy-independent merging R factor value Rrim, | 0.736 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.066 The precision-indicating merging R factor value Rpim, | 0.034 The precision-indicating merging R factor value Rpim, | 0.399 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 193381 Total number of measured reflections. | 9399 The total number of reflections measured for this | 9600 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 56878 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2844 The total number of measured reflections which are symmetry- | 2846 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 7.26 The mean of the ratio of the intensities to their | 17.43 The ratio of the mean of the intensities of the reflections | 1.80 The ratio of the mean of the intensities of the reflections |
Completeness (spherical) [%] _reflns.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_spherical | 60.2 Completeness (as a percentage) of symmetry-unique data | 98.7 Completeness (as a percentage) of symmetry-unique data | 10.1 Completeness (as a percentage) of symmetry-unique data |
Completeness (ellipsoidal) [%] _reflns.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_ellipsoidal | 92.2 Completeness (as a percentage) of symmetry-unique data | 98.7 Completeness (as a percentage) of symmetry-unique data | 74.2 Completeness (as a percentage) of symmetry-unique data |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 3.4 Overall redundancy for this data set. | 3.3 Redundancy for the current shell. | 3.4 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.994 The Pearson's correlation coefficient expressed as a decimal value | 0.994 The Pearson's correlation coefficient expressed as a decimal value | 0.686 The Pearson's correlation coefficient expressed as a decimal value |
Anomalous completeness (spherical) _reflns.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous | 57.7 Completeness (as a percentage) of symmetry-unique | 94.7 Completeness (as a percentage) of symmetry-unique | 9.7 Completeness (as a percentage) of symmetry-unique |
Anomalous completeness (ellipsoidal) _reflns.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous | 88.4 Completeness (as a percentage) of symmetry-unique | 94.7 Completeness (as a percentage) of symmetry-unique | 70.6 Completeness (as a percentage) of symmetry-unique |
Anomalous multiplicity _reflns.pdbx_redundancy_anomalous _reflns_shell.pdbx_redundancy_anomalous | 1.8 The overall redundancy of anomalous difference data | 1.7 The redundancy of anomalous difference data within the | 1.7 The redundancy of anomalous difference data within the |
CC(ano) _reflns.pdbx_CC_half_anomalous _reflns_shell.pdbx_CC_half_anomalous | -0.011 The overall correlation coefficient between two randomly | -0.044 The correlation coefficient within the spherical shell | -0.021 The correlation coefficient within the spherical shell |
|DANO|/σ(DANO) _reflns.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous | 0.799 The overall mean ratio of absolute anomalous intensity | 0.706 The mean ratio of absolute anomalous intensity | 0.826 The mean ratio of absolute anomalous intensity |
Refinement | |
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PDB entry ID _entry.id | 8SMU |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2023-04-26 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 48.3 - 2.450 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2087 / 0.2328 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | WARNING: no starting model (for MR) given |