Data quality metrics extracted from 3sdc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3SDC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX2
Temperature [K]
_diffrn.ambient_temp
213
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-03-10
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Software
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.15; 2009/03/31; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
94.35 94.35 287.86 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
NA

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
89.657 66.716 3.270
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.100 9.800 3.100
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.222 0.010 0.010
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.084 1.124
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.034 0.447
Total number of observations
_reflns_shell.number_measured_all
- 5071 20743
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
23961 861 3451
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
6.90 6.70 0.80
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.4 96.1 99.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.6 5.9 6.0
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3SDC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-06-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
66.7 - 3.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2402 / 0.2921
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given