Data quality metrics extracted from 8scc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8SCC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
LNLS SIRIUS BEAMLINE MANACA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
LNLS SIRIUS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MANACA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2022-09-28
Detector
_diffrn_detector.type
DECTRIS PILATUS 2M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.977180
Software
Data reduction
_software.classification
autoPROC
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER (2.8.3)
Refinement
_software.classification
PHENIX (1.19.2_4158)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
125.310 55.796 107.732 90.0 110.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97718 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
101.230
High resolution limit [Å]
_reflns.d_resolution_high
2.090
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.239
Rmeas
_reflns.pdbx_Rrim_I_all
0.273
Rpim
_reflns.pdbx_Rpim_I_all
0.131
Total number of observations
_reflns.pdbx_number_measured_all
168734
Total number unique
_reflns.number_obs
41096
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
6.30
Completeness [%]
_reflns.percent_possible_obs
98.0
Multiplicity
_reflns.pdbx_redundancy
4.1
CC(1/2)
_reflns.pdbx_CC_half
0.982

Refinement
PDB entry ID
_entry.id
8SCC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-04-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
101.2 - 2.090 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1804 / 0.2187
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given