Data quality metrics extracted from 5scg.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5SCG at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I03
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I03
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2020-08-11
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9762
Software
Data reduction
_software.classification
XDS (Wolfgang Kabsch; Wolfgang.Kabsch@mpimf-heidelberg.mpg.de)
Data scaling
_software.classification
STARANISO
Phasing
_software.classification
PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
BUSTER (2.10.4 (16-JUL-2021); Gerard Bricogne; buster-develop@GlobalPhasing.com)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
207.968 113.098 188.628 90.00 91.73 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97620 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
188.542 188.542 2.073
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.937 5.773 1.937
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.066 0.026 1.311
  Rmeas - - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.027 0.010 0.524
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs
1757741 84636 89244
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
250086 12504 12504
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
14.70 46.80 1.40
Completeness [%]
_reflns.percent_possible_obs
94.8 - -
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.0 6.8 7.1
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.999 0.597

Refinement
PDB entry ID
_entry.id
5SCG
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2021-12-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
188.5 - 1.937 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2001 / 0.2292
Structure solution method
_refine.pdbx_method_to_determine_struct
MR