Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | PETRA III, EMBL c/o DESY Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | P13 (MX1) Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2023-11-07 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.60832 Comma separated list of wavelengths or wavelength range. |
Software | |
Data collection _software.classification | MxCuBE (v2) The classification of the program according to its |
Data reduction #1 _software.classification | autoPROC (1.1.7) The classification of the program according to its |
Data reduction #2 _software.classification | XDS (BUILT 20230630) The classification of the program according to its |
Data scaling #1 _software.classification | Aimless (0.7.13) The classification of the program according to its |
Data scaling #2 _software.classification | pointless (1.12.15) The classification of the program according to its |
Data scaling #3 _software.classification | STARANISO (2.3.74) The classification of the program according to its |
Phasing _software.classification | PHASER (2.8.3) The classification of the program according to its |
Model building #1 _software.classification | Coot (0.9.8.8) The classification of the program according to its |
Model building #2 _software.classification | BUCCANEER (3.5.2) The classification of the program according to its |
Refinement #1 _software.classification | REFMAC (5.8.0425) The classification of the program according to its |
Refinement #2 _software.classification | BUSTER (2.10.4) The classification of the program according to its |
Refinement #3 _software.classification | PDB-REDO (8.06) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 60.526 Unit-cell length a corresponding to the structure reported in 53.341 Unit-cell length b corresponding to the structure reported in 64.760 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 102.74 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.60832 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 63.160 The largest value in angstroms for the interplanar spacings | 63.160 The highest value in angstroms for the interplanar spacings | 2.340 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.270 The smallest value in angstroms for the interplanar spacings | 9.060 The smallest value in angstroms for the interplanar spacings | 2.270 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.059 The R value for merging intensities satisfying the observed | 0.045 The value of Rmerge(I) for reflections classified as 'observed' | - |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.071 The redundancy-independent merging R factor value Rrim, | 0.055 The redundancy-independent merging R factor value Rrim, | 1.000 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.040 The precision-indicating merging R factor value Rpim, | 0.030 The precision-indicating merging R factor value Rpim, | 0.404 The precision-indicating merging R factor value Rpim, |
Total number of observations | - | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 18764 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 329 The total number of measured reflections classified as 'observed' | 1722 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 13.60 The mean of the ratio of the intensities to their | 29.50 The ratio of the mean of the intensities of the reflections | 2.00 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.2 The percentage of geometrically possible reflections represented | 98.6 The percentage of geometrically possible reflections represented | 99.2 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 5.9 Overall redundancy for this data set. | 5.4 Redundancy for the current shell. | 6.0 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.998 The Pearson's correlation coefficient expressed as a decimal value | 0.996 The Pearson's correlation coefficient expressed as a decimal value | 0.852 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 8S8U |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2024-03-07 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 59.0 - 2.270 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2457 / 0.2747 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | WARNING: no starting model (for MR) given |