Data quality metrics extracted from 7rvk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7RVK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
ELECTRON CRYSTALLOGRAPHY
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ELECTRON MICROSCOPE
Source details
_diffrn_source.type
OTHER
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CMOS
Collection date
_diffrn_detector.pdbx_collection_date
2016-09-22
Detector
_diffrn_detector.type
TVIPS TEMCAM-F416
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.0251
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
SHELXD
Refinement
_software.classification
BUSTER (2.10.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
4.86 14.11 18.41 90.00 93.71 101.21
Wavelength
_diffrn_radiation_wavelength.wavelength
0.02510 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
13.840 13.840 1.030
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.000 4.470 1.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.238 0.159 0.430
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.257 0.171 0.485
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs
12907 121 524
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
2076 18 123
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
5.05 7.72 2.25
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
80.3 69.2 64.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.2 6.7 4.3
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.980 0.976 0.862

Refinement
PDB entry ID
_entry.id
7RVK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2021-08-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
13.8 - 1.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1984 / 0.2382
Structure solution method
_refine.pdbx_method_to_determine_struct
AB INITIO PHASING