Data quality metrics extracted from 7rvd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.

Experimental information for 7RVD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
ELECTRON CRYSTALLOGRAPHY
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ELECTRON MICROSCOPE
Source details
_diffrn_source.type
OTHER
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CMOS
Collection date
_diffrn_detector.pdbx_collection_date
2016-11-13
Detector
_diffrn_detector.type
TVIPS TEMCAM-F416
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.0251
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
SHELXD
Refinement
_software.classification
PHENIX (1.12_2829)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
4.87 10.17 31.29 94.65 90.73 101.15
Wavelength
_diffrn_radiation_wavelength.wavelength
0.02510 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å] 
_reflns.d_resolution_low _reflns_shell.d_res_low
 10.391 10.391 1.030
High resolution limit [Å] 
_reflns.d_resolution_high _reflns_shell.d_res_high
 1.000 4.470 1.000
Rmerge 
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
 0.167 0.171 0.514
Rmeas 
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
 0.197 0.194 0.650
  Rpim - - -
Total number of observations 
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs
 8918 100 523
Total number unique 
_reflns.number_obs _reflns_shell.number_unique_obs
 2977 30 215
<I/σ(I)> 
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
 3.99 7.81 1.33
Completeness [%] 
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
 93.9 88.2 94.7
Multiplicity 
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
 3.0 3.3 2.4
CC(1/2) 
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
 0.988 0.975 0.742

Refinement
PDB entry ID
_entry.id
7RVD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2021-08-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
10.4 - 1.003 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2011 / 0.2499
Structure solution method
_refine.pdbx_method_to_determine_struct
AB INITIO PHASING