Data quality metrics extracted from 3rpd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3RPD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-10-11
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97942
Software
Data collection
_software.classification
SBC-Collect
Data reduction #1
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data reduction #2
_software.classification
HKL-3000
Data scaling #1
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data scaling #2
_software.classification
HKL-3000
Phasing #1
_software.classification
MLPHARE (Eleanor J. Dodson; ccp4@ccp4.ac.uk)
Phasing #2
_software.classification
DM (6.1; Kevin Cowtan; kowtan@ysbl.york.ac.uk)
Phasing #3
_software.classification
HKL-3000
Phasing #4
_software.classification
SHELXD
Phasing #5
_software.classification
SOLVE
Phasing #6
_software.classification
RESOLVE
Phasing #7
_software.classification
CCP4
Model building #1
_software.classification
SHELXE
Model building #2
_software.classification
ARP/wARP
Model building #3
_software.classification
O
Model building #4
_software.classification
Coot
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
46.099 89.371 86.526 90.00 92.45 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97942 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.530
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.500 4.070 1.500
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.088 0.071 0.425
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
111443 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.10 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 98.3 98.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.4 4.4 4.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3RPD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-04-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
36.5 - 1.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1636 / 0.1890
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD