Data quality metrics extracted from 3rdk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3RDK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL12-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL12-2
Temperature [K]
_diffrn.ambient_temp
105
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-02-07
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data collection
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.5.0102)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
165.113 165.113 66.355 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
117.040
High resolution limit [Å]
_reflns.d_resolution_high
1.490
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.047
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
148538
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
33.70
  Completeness [%] -
Multiplicity
_reflns.pdbx_redundancy
8.8
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3RDK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-04-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
117.0 - 1.490 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1452 / 0.1842
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given