Data quality metrics extracted from 2raf.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2RAF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL11-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL11-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-07-25
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91837, 0.97886, 0.97917
Software
Data collection
_software.classification
MAR345 (CCD)
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Phasing
_software.classification
SOLVE (Tom Terwilliger; terwilliger@LANL.gov)
Model building
_software.classification
MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu)
Refinement #1
_software.classification
REFMAC (5.3.0040; Murshudov, G.N.; ccp4@dl.ac.uk)
Refinement #2
_software.classification
PHENIX (P.D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
53.33 152.57 140.07 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.918370.978860.97917 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.540 29.540 1.660
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.600 3.440 1.600
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.053 0.020 0.368
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 24734 23229
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
75349 14311 14986
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.80 32.70 2.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 97.4 98.5
  Multiplicity - - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
2RAF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2007-09-14
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.5 - 1.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1510 / 0.1860
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD