Data quality metrics extracted from 6qdk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6QDK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID29
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID29
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2010-12-05
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9790
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA
Phasing
_software.classification
SHARP
Model building
_software.classification
O
Refinement #1
_software.classification
PHENIX (1.13_2998: ???)
Refinement #2
_software.classification
CNS
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 61 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
86.91 86.91 718.54 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 3.490
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.400 3.400
  Rmerge - -
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.176 0.848
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
41611 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.00 1.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 96.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
18.2 8.8
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
6QDK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-01-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.0 - 3.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2872 / 0.3189
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD