Data quality metrics extracted from 5qd1.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5QD1 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU FR-E
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2006-09-24
Detector
_diffrn_detector.type
MAR scanner 345 mm plate
Software
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
CNX
Refinement #1
_software.classification
PHENIX (1.12_2829)
Refinement #2
_software.classification
CNX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
82.849 104.217 100.832 90.00 104.37 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54178 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
80.257
High resolution limit [Å]
_reflns.d_resolution_high
2.400
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.061
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
64959
  <I/σ(I)> -
Completeness [%]
_reflns.percent_possible_obs
99.9
  Multiplicity -
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5QD1
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-12-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
80.3 - 2.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1630 / 0.1970
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given