Data quality metrics extracted from 4qdd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4QDD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
CLSI BEAMLINE 08B1-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
CLSI
Beamline
_diffrn_source.pdbx_synchrotron_beamline
08B1-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-02-24
Detector
_diffrn_detector.type
RAYONIX MX300HE
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.98
Software
Data collection
_software.classification
MxDC
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
REFMAC (5.8.0071; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 63
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
163.17 163.17 47.14 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
141.309 53.410 2.740
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.600 8.220 2.600
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.244 0.013 0.013
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 4981 20299
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
22485 771 3248
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.10 14.80 0.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.7 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.7 6.5 6.2
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4QDD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2014-05-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
53.4 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2249 / 0.2560
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given