Data quality metrics extracted from 3qd6.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3QD6 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID29
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID29
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-07-10
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0050
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.2.25; 21/9/2006; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (2.1.1; Thu Nov 22 16:35:27 2007; Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
CNS (1.3; Axel T. Brunger; axel.brunger@yale.edu)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
133.212 133.212 211.151 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00500 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
114.961 114.961 3.690
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.200 11.070 3.500
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.102 0.046 0.351
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.114 0.506
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.072 0.308
Total number of observations
_reflns_shell.number_measured_all
- 2019 9409
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
24906 720 3796
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.90 4.50 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
93.7 82.3 97.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.6 2.8 2.5
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3QD6
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2011-01-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
115.0 - 3.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2450 / 0.2980
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1ALY